Molecule (Permanent Note) Template
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Summary
Briefly state what this molecule explains or synthesizes and which atom(s) it depends on.
Definition
What this molecule does that no single atom can do alone.
Scope
This note explains interactions and implications. It does not introduce new primitives.
Structural Introspection
Atoms Used (Declared Dependencies)
Dependency semantics
This list represents explicit conceptual dependencies, not incidental mentions.
Atoms Referencing This Molecule (Backlinks)
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Interpretation
These atoms reference this molecule but may not be foundational to it.
Atom Mentions Not Declared as Dependencies
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Hygiene check
If an atom appears here, consider whether it should be added to atoms:.
Source Status
- Internal RDD synthesis: ☐
- External alignment (physics): ☐
- External alignment (philosophy): ☐
- External alignment (neuroscience): ☐
Confidence level
- ☐ Exploratory
- ☐ Provisional
- ☐ Stable
Worked example (edit inline)
Before (bad):
After (pattern applied):
Anti-patterns
FAQ (short answers)
- What problem does this molecule solve that the atoms cannot?
- What assumptions does this molecule rely on?
- What would fail or become unclear if this molecule were removed?
References
Sources:
Related molecules:
Re-contextualization Log
Use this to record meaningful changes in framing, scope, or claims.
Keep entries short. Prefer facts over narrative.
- Date: <% tp.date.now("YYYY-MM-DD") %>
Change:
Reason:
Impact:
Sources touched:
Next check: